Olivier Pereira
Specialized in bioinformatics, molecular biology and genomics. He uses many computer languages (Perl, Python, Java, cluster computing, web development) to analyze NGS data.
Education:
2015-2019 PhD study at Sorbonne University, hosted by the Banyuls Oceanological Observatory, Banyuls-‐sur-‐Mer, France. Supervisor Dr P.E Galand. Uncovering the functional role and the ecology of uncultivated Euryarchaeota, key Archaea in aquatic ecosystems.
2014-‐2015 Master: Genetics and physiology, specialty: Analyses and modeling at Clermont-‐Ferrand University, France.
2012-‐2014 Master: Biology and environment, specialty: Microbiology, Genomics and ecology at Clermont-‐Ferrand University, France.
2009-‐2012 Bachelor: biology, biochemistry, cellular biology and molecular biology at Toulon University, France.
Work experience:
2015-2019 Popular science in a public aquarium, Banyuls sur Mer, France.
Responsibilities: Diffusion of scientific knowledge for children and non expert public.
2015 (2 months) Analyses of Virus metagenomes from hydrothermal vent at IFREMER in Brest France.
Responsibilities: Create annotation and analyses pipeline.
2014 (6 months) Development of news techniques to identify uncultivated couples of prokaryote/bacteriophages by molecular and bioinformatics (CRISPR/cas9) approach at Laboratory Microorganisms, Genome, and Environment (LMGE), Clermont-‐Ferrand University, France.
Responsibilities: Create a pipeline to link uncultivated viruses to host with NGS datasets. Implementation of double FISH between bacteriophage and prokaryotic cells (Phage-‐FISH).
2013 (4 months) Diversity study of a new group of uncultivated riparian bacteriophage at the LMGE, Clermont-‐Ferrand University, France.
Responsibilities: Development of primers and PCR amplification of the major capsid protein of a far T4. Analyses of phylogenetic diversity.
2011 (4 month) Screening biofilm biomolecules inhibiter and chemistry structure and function study at MAPIEM, Toulon University. France
Responsibilities: Extraction, isolation of secondary metabolites in Paramuricea clavata by HPLC.
2000-‐2012 Manager of a restaurant. Toulon, France
Responsibilities: Managing a team, supervise orders, accounting.
Published and submitted papers
2019 O Pereira, C Hochart, J-‐C Auguet, D Debroas and P.E Galand. 2018 Genomic ecology of Marine Group II, the most common marine planktonic Archaea across the surface ocean (under review in ISME J). P.E Galand, O Pereira, C Hochart, J-‐C Auguet, D Debroas. 2018.
2017
A strong link between marine microbial community composition and function challenges the idea of functional redundancy. ISME J; in press. DOI: 10.1038/s41396-‐018-‐0158-‐1. C Loiseau, V Hatte, C Andrieu, L Barlet, A Cologne, R De Oliveira, L Ferrato-‐ Berberian, H Gardon, D Lauber, M Molinier, S Monnerie, K N'Gou, B Penaud, O Pereira, J Picarle, A Septier, A Mahul, J-‐C Charvy, and F Enault. 2017
2015
PanGeneHome: A Web Interface to Analyze Microbial Pangenomes. J Bioinf Com Sys Bio 1(2): 108. S Roux, F Enault, V Ravet, O Pereira and M.B Sullivan. 2015.
Genomic characteristics and environmental distributions of the uncultivated Far-‐T4 phages. Front Microbiol 2015; 6 : 199
2011
D Linares, O Bottzeck, O Pereira, A Praud-‐Tabariès and Y Blache. 2011 Designing 2-‐aminoimidazole alkaloids analogs with anti-‐biofilm activities: Structure–activities relationships of polysubstituted triazoles. Bioorg Med lett. 2011; 21: 6751-‐6755