Olivier Pereira

2019-11-08

Specialized in bioinformatics, molecular biology and genomics. He uses many computer languages (Perl, Python, Java, cluster computing, web development) to analyze NGS data.

Education:

2015-2019 PhD study at Sorbonne University, hosted by the Banyuls Oceanological Observatory, Banyuls-­‐sur-­‐Mer, France. Supervisor Dr P.E Galand. Uncovering the functional role and the ecology of uncultivated Euryarchaeota, key Archaea in aquatic ecosystems. 
2014-­‐2015 Master: Genetics and physiology, specialty: Analyses and modeling at Clermont-­‐Ferrand University, France. 
2012-­‐2014 Master: Biology and environment, specialty: Microbiology, Genomics and ecology at Clermont-­‐Ferrand University, France. 
2009-­‐2012 Bachelor: biology, biochemistry, cellular biology and molecular biology at Toulon University, France. 

Work experience:

2015-2019 Popular science in a public aquarium, Banyuls sur Mer, France.

Responsibilities: Diffusion of scientific knowledge for children and non expert public. 

2015 (2 months) Analyses of Virus metagenomes from hydrothermal vent at IFREMER in Brest France. 

Responsibilities: Create annotation and analyses pipeline.

2014 (6 months) Development of news techniques to identify uncultivated couples of prokaryote/bacteriophages by molecular and bioinformatics (CRISPR/cas9) approach at Laboratory Microorganisms, Genome, and Environment (LMGE), Clermont-­‐Ferrand University, France. 

Responsibilities: Create a pipeline to link uncultivated viruses to host with NGS datasets. Implementation of double FISH between bacteriophage and prokaryotic cells (Phage-­‐FISH).

2013 (4 months) Diversity study of a new group of uncultivated riparian bacteriophage at the LMGE, Clermont-­‐Ferrand University, France.

Responsibilities: Development of primers and PCR amplification of the major capsid protein of a far T4. Analyses of phylogenetic diversity.

2011 (4 month) Screening biofilm biomolecules inhibiter and chemistry structure and function study at MAPIEM, Toulon University. France 

Responsibilities: Extraction, isolation of secondary metabolites in Paramuricea clavata by HPLC.

2000-­‐2012 Manager of a restaurant. Toulon, France

Responsibilities: Managing a team, supervise orders, accounting.

Published and submitted papers

2019 O Pereira, C Hochart, J-­‐C Auguet, D Debroas and P.E Galand. 2018 Genomic ecology of Marine Group II, the most common marine planktonic Archaea across the surface ocean (under review in ISME J). P.E Galand, O Pereira, C Hochart, J-­‐C Auguet, D Debroas. 2018.

2017 

A strong link between marine microbial community composition and function challenges the idea of functional redundancy. ISME J; in press. DOI: 10.1038/s41396-­‐018-­‐0158-­‐1. C Loiseau, V Hatte, C Andrieu, L Barlet, A Cologne, R De Oliveira, L Ferrato-­‐ Berberian, H Gardon, D Lauber, M Molinier, S Monnerie, K N'Gou, B Penaud, O Pereira, J Picarle, A Septier, A Mahul, J-­‐C Charvy, and F Enault. 2017

2015 

PanGeneHome: A Web Interface to Analyze Microbial Pangenomes. J Bioinf Com Sys Bio 1(2): 108. S Roux, F Enault, V Ravet, O Pereira and M.B Sullivan. 2015.

Genomic characteristics and environmental distributions of the uncultivated Far-­‐T4 phages. Front Microbiol 2015; 6 : 199

2011 

D Linares, O Bottzeck, O Pereira, A Praud-­‐Tabariès and Y Blache. 2011 Designing 2-­‐aminoimidazole alkaloids analogs with anti-­‐biofilm activities: Structure–activities relationships of polysubstituted triazoles. Bioorg Med lett. 2011; 21: 6751-­‐6755