Publications

  • Journal Papers
  • Journal Papers

Journal Publications

· X Guo, B Zhang, W Zeng, S Zhao, & D Ge. (2019). “G3viz: an R package to interactively visualize genetic mutation data using a lollipop-diagram”, Bioinformatics, 2019 (to appear).

· X Guo, A Bernard, DA Orlando, SB Haase, & AJ Hartemink. (2013). “Branching process deconvolution algorithm reveals a detailed cell-cycle transcription program”, Proceedings of the National Academy of Sciences (PNAS), 110, E968-E977.

· MB Mayhew, X Guo, SB Haase, & AJ Hartemink. (2012). “Close encounters of the collaborative kind”, IEEE Computer, 45, pp. 24-30. (cover feature)

· X Guo, ML Bulyk, & AJ Hartemink. (2012). “Intrinsic disorder within and flanking the DNA-binding domains of human transcription factors”, In Pac Symp Biocomput 2012 (PSB12), pp. 104-115.

· X Guo, & AJ Hartemink. (2009). “Domain-oriented edge-based alignment of protein interaction networks”, Bioinformatics, 25, pp. i240-246.

Clinical Conference Abstracts

· X Zhao, M Zavodovskaya, L Zhuo, K Kwei, X Guo, et al. “Systematic evaluation of transcriptome sequencing shows comparable profiles for an exome-capture method for formalin-fixed, paraffin-embedded (FFPE) breast cancer tissues and the standard poly-A method for matched fresh frozen (FF) tissues”, AACR, Cancer Research 77 (13 Supplement), P3833. 2017.

· BR Bhandari, S Lee, X Zhao, E Huntzicker, X Guo, et al. “The biological and clinical relevance of anti-metalloproteinase-9 antibody (GS-5745) in treatment of ulcerative colitis patients”, ECCO, Journal of Crohns&Colitis, 10, S473-4, 2016.

· AJ Thompson, O Podlaha, Z Jiang, X Guo, L Zhuo, et al. “Deletion of APOBEC3B is Associated with Hepatitis B eAg Status in Patients with Chronic HBV Infection”, AASLD, Hepatology, 62, 1013-4A, 2015.

· NH Afdhal, TJ Urban, ZD Goodman, K Patel, D Ge, X Guo, et al. “Genome Wide Association Study (GWAS) Identifies a SNP Near the MRC2 (mannose receptor C, type 2) Gene Associated with Increased Liver Collagen content in Caucasian HBV patients”, AASLD, Hepatology, 60, 414A, 2014

Journal Publications

· X Guo, B Zhang, W Zeng, S Zhao, & D Ge. (2019). “G3viz: an R package to interactively visualize genetic mutation data using a lollipop-diagram”, Bioinformatics, 2019 (to appear).

· X Guo, A Bernard, DA Orlando, SB Haase, & AJ Hartemink. (2013). “Branching process deconvolution algorithm reveals a detailed cell-cycle transcription program”, Proceedings of the National Academy of Sciences (PNAS), 110, E968-E977.

· MB Mayhew, X Guo, SB Haase, & AJ Hartemink. (2012). “Close encounters of the collaborative kind”, IEEE Computer, 45, pp. 24-30. (cover feature)

· X Guo, ML Bulyk, & AJ Hartemink. (2012). “Intrinsic disorder within and flanking the DNA-binding domains of human transcription factors”, In Pac Symp Biocomput 2012 (PSB12), pp. 104-115.

· X Guo, & AJ Hartemink. (2009). “Domain-oriented edge-based alignment of protein interaction networks”, Bioinformatics, 25, pp. i240-246.

Clinical Conference Abstracts

· X Zhao, M Zavodovskaya, L Zhuo, K Kwei, X Guo, et al. “Systematic evaluation of transcriptome sequencing shows comparable profiles for an exome-capture method for formalin-fixed, paraffin-embedded (FFPE) breast cancer tissues and the standard poly-A method for matched fresh frozen (FF) tissues”, AACR, Cancer Research 77 (13 Supplement), P3833. 2017.

· BR Bhandari, S Lee, X Zhao, E Huntzicker, X Guo, et al. “The biological and clinical relevance of anti-metalloproteinase-9 antibody (GS-5745) in treatment of ulcerative colitis patients”, ECCO, Journal of Crohns&Colitis, 10, S473-4, 2016.

· AJ Thompson, O Podlaha, Z Jiang, X Guo, L Zhuo, et al. “Deletion of APOBEC3B is Associated with Hepatitis B eAg Status in Patients with Chronic HBV Infection”, AASLD, Hepatology, 62, 1013-4A, 2015.

· NH Afdhal, TJ Urban, ZD Goodman, K Patel, D Ge, X Guo, et al. “Genome Wide Association Study (GWAS) Identifies a SNP Near the MRC2 (mannose receptor C, type 2) Gene Associated with Increased Liver Collagen content in Caucasian HBV patients”, AASLD, Hepatology, 60, 414A, 2014

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